MmuEX0029748 @ mm10
Exon Skipping
Gene
ENSMUSG00000031533 | Mrps31
Description
mitochondrial ribosomal protein S31 [Source:MGI Symbol;Acc:MGI:1913153]
Coordinates
chr8:22411361-22419885:+
Coord C1 exon
chr8:22411361-22411584
Coord A exon
chr8:22414716-22415003
Coord C2 exon
chr8:22419727-22419885
Length
288 bp
Sequences
Splice sites
3' ss Seq
TCCTTAATGTGTCATTTCAGGAC
3' ss Score
9.75
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
AACATCTCGGAGGACATTTTTGGCAGAGGGACGAACCAGTTCAGCTGTGCACTTCTTGGCGCTTGTGCTTCCGGCTGTGCTCTGGTTTGAGTTTGTATTTACACGATGCTCCACAGAATCCCGGCATTTCTACGCCCTCGCCCTTTCTCGGGCCTCCCTTTGTCCTGTGGAAACCGGGACGTCTCGGTGGCTGTGCTACCCGCGGCTCAGTCCGGAGCTGTGAG
Seq A exon
GACAGAAAATAATATCCAAAGACATTTTTGCACTAGCAGATCAATCTGTAGCAAGAAAGTTGACCAGTCTGTTCCAGCCAATGAAATTTCCCAGAAGGCAGCAGAGAGCCAAGGCAGGGGAAAGGAGACTTTGAAAAAAGACCTGCTGGACATTATTAAGGACATGAAAGTTGACCTGAGCACAGCAAATGTGAAAACACCAAAGCCACGTGGCAGAAAACCTTCTGCCAGTCTGGAGGCTACCGTTGACAGGCTTCAGAAAGCTCCGGAAGACCCTCCAAAGAAGAG
Seq C2 exon
GAATGAGTTCCTGAGTCCTGAGTTGGTGGCTGCAGCGTCGGCTGTTGCAGATTCCCTACCTTTTGACAAGCAGACAACCAAGTCAGAGCTGCTCAGGCAGCTGCAGCAACACGAGGAGGAGTTGAGGGCTCAGAAGGACAGAGAGAAGCGCAGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031533_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.629 C2=0.759
Domain overlap (PFAM):
C1:
NO
A:
PF154331=MRP-S31=PU(17.6=53.6)
C2:
PF154331=MRP-S31=FE(17.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTGCTCTGGTTTGAGTT
R:
CTCTGTCCTTCTGAGCCCTCA
Band lengths:
295-583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types