HsaEX1032627 @ hg38
Exon Skipping
Gene
ENSG00000217576 | RP11-248G5.8
Description
NA
Coordinates
chr13:52186683-52223331:-
Coord C1 exon
chr13:52223239-52223331
Coord A exon
chr13:52189639-52189914
Coord C2 exon
chr13:52186683-52186823
Length
276 bp
Sequences
Splice sites
3' ss Seq
TTTTTAATGCATCTTTCCAGGAC
3' ss Score
9.43
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTATTTCATGACACTGAAACAGACAGGGTAATAACTGATGTGTTCAACTGTCCACCTCTGTATGATGATGTGAAAGTGCAAGCTTCCTCTTCA
Seq A exon
GACAAAAAATAATATCCAAAGATATTTTGGCACTAACAGCGCTATCTGTAGCAAGAAAGTTGAGCAGTGTGAACTGTTGAGACTTCCAAGAAGACTTCAGAGAACCAAGACAGTGTAAAGGAAAACAGGAAAAAAGACTTGTTAGACATTATTAAGGGCACGAAAGTTGAATTGAGCACAGTAAATGTACAAACAACAAAGCCACCCAACAGAAGTCCACTTAAAAGCTACAACTGGCCCGCCTCAAAGAGCTACAGAGCATGCTCCAAAGAAGAG
Seq C2 exon
AAATGAGCCCGTGAGTCCTGAGTTGGTGGCAGCTGCATCTGCTGCTCTGTTTTGACAAGCAAACAAGCCAGAACTGCTCAGGCAGCTCCGTAGCATGAGGAAGAGTCAGGGGCACAGAGAGATGGAGAGAGACCTAGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000217576-'25-30,'25-29,35-30
Average complexity
C1
Mappability confidence:
94%=85=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGACACTGAAACAGACAGGG
R:
AACTAGGTCTCTCTCCATCTCTCTG
Band lengths:
228-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains