HsaEX0040198 @ hg19
Exon Skipping
Gene
ENSG00000102738 | MRPS31
Description
mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:16632]
Coordinates
chr13:41333084-41345309:-
Coord C1 exon
chr13:41345121-41345309
Coord A exon
chr13:41340882-41341169
Coord C2 exon
chr13:41333084-41333242
Length
288 bp
Sequences
Splice sites
3' ss Seq
TCTTTAATGCATCTTTCCAGGAC
3' ss Score
9.07
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
TTTCAGTTGTGTTCTTGGTTCATTTCGTGTCTCGGCGATGTTTCCTAGAGTCTCGACGTTCCTACCTCTTCGCCCCCTTTCCCGCCACCCTTTGTCCTCTGGAAGCCCGGAGACATCAGCGGCTGCGATTATGCTACTCACTGTTCGGCACGGAACAGTCAGGTACCGCAGTTCAGCGCTGTTGGCCCG
Seq A exon
GACAAAAAATAACATCCAAAGATATTTTGGCACTAACAGTGTGATCTGTAGCAAGAAAGATAAGCAGTCTGTTCGAACTGAGGAGACTTCCAAGGAGACTTCAGAGAGCCAAGACAGTGAAAAGGAAAATACGAAAAAAGACTTGTTAGGCATTATTAAGGGCATGAAAGTTGAATTAAGCACAGTAAATGTACGAACAACAAAGCCCCCCAAAAGAAGACCACTTAAAAGTTTGGAAGCTACACTTGGCAGGCTTCGAAGAGCTACAGAATATGCTCCAAAGAAGAG
Seq C2 exon
AATTGAGCCCCTGAGTCCTGAGTTGGTGGCAGCTGCATCTGCTGTGGCAGATTCTCTCCCTTTTGATAAGCAAACAACCAAGTCAGAGCTGCTGAGCCAGCTCCAGCAGCATGAGGAAGAGTCAAGGGCACAGAGAGATGCAAAGCGACCTAAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102738-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=0.649 C2=0.676
Domain overlap (PFAM):
C1:
NO
A:
PF154331=MRP-S31=PU(17.6=53.6)
C2:
PF154331=MRP-S31=FE(17.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTTCGTGTCTCGGCGATG
R:
GCCCTTGACTCTTCCTCATGC
Band lengths:
299-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)