HsaEX0030271 @ hg38
Exon Skipping
Gene
ENSG00000273784 | RP11-78J21.7
Description
NA
Coordinates
chr13:52600042-52627578:+
Coord C1 exon
chr13:52600042-52600220
Coord A exon
chr13:52621989-52622264
Coord C2 exon
chr13:52627438-52627578
Length
276 bp
Sequences
Splice sites
3' ss Seq
TCTTTAATGCATCTTTCCAGGAC
3' ss Score
9.07
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
ACTTTCTCTGCCCGGCCCTGAACGCTCGCCGCCCCTGCCCAGCCGCCCACTGTCTGGCAGCCTGCAAGTCTCCATTCAGAAGCGGCTCCGTGCTGCCCAGCGATGGCGCCCTGGCGGCGCGGAAGCCCGCGGCCAAATGACACGACTTGGGGGCAAAGGAGGACAACAGTTCCCACCAG
Seq A exon
GACAAAAAATAATATCCAAAGATATTTTGGCACTAACGGCGCTATCTGTAGCAAGAAAGTTGAGCAGTGTGAACTGTTGAGACTTCCAAGGAGACTTCAGACAACCAAGACAGTGTAAAGGAAAACAGAGAAAAAGACTTGTTAGACATTATTAAGGGCACGAAAGTTGAATTGAGCACAGTAAATGTACAAACAACAAAGCCACCCAACAGAAGTTCACTTAAAAGCTACAACTGGCGGGCCTCAAAGAGCTTTAGGACATGCTCCAAAGAAGAG
Seq C2 exon
AAATGAGCCCCTGAGTCCTGAGTTGGTGGCAGCTGCATCTGCTGCTCTGTTTTGACAAGCAAACAAGCCAGAACTGCTCAGGCAGCTCCGTAGCATGAGGAAGAGTCAGGGGCACAGAGAGATGGAGAGAGACCTAGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000273784-'0-2,'0-0,11-2
Average complexity
C1
Mappability confidence:
88%=82=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCTCTGCCCGGCCCT
R:
ATCTCTCTGTGCCCCTGACTC
Band lengths:
301-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development