HsaEX0030271 @ hg19
Exon Skipping
Gene
ENSG00000139675 | HNRNPA1L2
Description
heterogeneous nuclear ribonucleoprotein A1-like 2 [Source:HGNC Symbol;Acc:27067]
Coordinates
chr13:53191605-53201713:+
Coord C1 exon
chr13:53191605-53191817
Coord A exon
chr13:53196124-53196399
Coord C2 exon
chr13:53201573-53201713
Length
276 bp
Sequences
Splice sites
3' ss Seq
TCTTTAATGCATCTTTCCAGGAC
3' ss Score
9.07
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
AGACCAGAAACGGAAGAGAGCGCGGGGGATGTGTTTGGCGTGGGGCGCACTGTTCAGTTGCTCTCCTGGATGGCTTTATGTCTCCGCGGTGTTTCCTAGAGTCTCGGCGTTTCTACCTCTTCGCACCCTTTCCTGCCACCCTTTGTCCCCTGGAAGCCCGGAGACATCAGCGGCTGCAATTTTGCTACTCGCTGCTCGGCGTGGAACTGTCAG
Seq A exon
GACAAAAAATAATATCCAAAGATATTTTGGCACTAACGGCGCTATCTGTAGCAAGAAAGTTGAGCAGTGTGAACTGTTGAGACTTCCAAGGAGACTTCAGACAACCAAGACAGTGTAAAGGAAAACAGAGAAAAAGACTTGTTAGACATTATTAAGGGCACGAAAGTTGAATTGAGCACAGTAAATGTACAAACAACAAAGCCACCCAACAGAAGTTCACTTAAAAGCTACAACTGGCGGGCCTCAAAGAGCTTTAGGACATGCTCCAAAGAAGAG
Seq C2 exon
AAATGAGCCCCTGAGTCCTGAGTTGGTGGCAGCTGCATCTGCTGCTCTGTTTTGACAAGCAAACAAGCCAGAACTGCTCAGGCAGCTCCGTAGCATGAGGAAGAGTCAGGGGCACAGAGAGATGGAGAGAGACCTAGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139675-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAGAAACGGAAGAGAGCG
R:
CCTGAGCAGTTCTGGCTTGTT
Band lengths:
294-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)