BtaEX6056659 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36392891-36394286:-
Coord C1 exon
chr12:36394172-36394286
Coord A exon
chr12:36393300-36393550
Coord C2 exon
chr12:36392891-36393012
Length
251 bp
Sequences
Splice sites
3' ss Seq
AATATTTCTCTCTATTTAAGGGT
3' ss Score
9.91
5' ss Seq
GAAGGTAGT
5' ss Score
-4.78
Exon sequences
Seq C1 exon
TACTTGTGTGGTAGTAATCGAAAAGACAACATATTTATTGATCCAGGATACCAGACATTTGAGCAAGAATTGAATAAGATACTCCGAAGTTGGCAACCAAGCATACTTCCAGATG
Seq A exon
GGTCAATATTTTCTCGAGTTGAAGAAGATTATCTGTGGAGGATAAAACAGCTAGGATCACACTCTCCAGTAGCTCTTCTGAACACCCTGTTCTACTTTAACACTAAGTATTTTGGCCTGAAAACAGTGGAACAGCACTTACGGCTTTCCTTTGGCACTGTGTTTAGGCACTGGAAAAAAAACCCTTTAACCATGGAAAATAAAGCCTGTCTTCGGTACCAAGTGTCTTCCTTGTGCGGAACAGATAGTGAA
Seq C2 exon
GATAAAATTACTACTGGAAAAAGAAAACATGAAGATGATGAGCCAGTATTTGAACAAATTGAAAATACAGCCAATCCTTCTAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403-'44-44,'44-42,46-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.488
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
PF120123=DUF3504=PU(48.3=98.8)
C2:
PF120123=DUF3504=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTGTGTGGTAGTAATCGAAAAGAC
R:
CTCTTAGACAAGTAGCATTCAAACA
Band lengths:
236-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]