DreEX6036003 @ danRer10
Exon Skipping
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21622529-21623522:-
Coord C1 exon
chr9:21623408-21623522
Coord A exon
chr9:21622796-21623038
Coord C2 exon
chr9:21622529-21622664
Length
243 bp
Sequences
Splice sites
3' ss Seq
GTGAGTATTTTTCCTTTGAGGTT
3' ss Score
2.12
5' ss Seq
ATGGTGTGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
CATTTGCAGGACAAAGGAAGGACAGATGACCTCTTTAATGACTCACAGTATGAAATGTTTGGGGAGGAACTGAACAAGCTCCTCAAAGACTGGCAACCCAGTGTTCTTCCGGATG
Seq A exon
GTTCTCGGTGGAGTCGTGTTGAAGAGCAATATCTGTGGAGCAGCGGACAGCTTGGAGAACAGGCGCCTTCTGTCCTGCTGAGATCTGTATTCTATCTCAACACCAAATACTTTGGTCTTCGCACCCCAGAACAGCACTTACGCCTCTCATTTGCAAACGTCTATGGCCCAAGCAGCTCGAAACCGCACAGCCATGAGACCACCGTCTGTATACGCATCCCCTCCATCTCACAGGAGCAGCATG
Seq C2 exon
AGCAATCAGGAAGTAAGAGAAGACGTAAAGATTACTGTGACTCAAATTTTGATTCAGACAGCGGTTCAGGGGGATCCGCACACTGTCCTGTTAAGAAGCATGAGTGCCGACTGTATGAGCTTTACCTTTCGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353-'31-28,'31-27,32-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.024 C2=0.391
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
PF120123=DUF3504=PU(46.6=98.8)
C2:
PF120123=DUF3504=FE(25.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGGACAAAGGAAGGACA
R:
TCGAAAGGTAAAGCTCATACAGTCG
Band lengths:
244-487
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]