HsaEX6039444 @ hg19
Exon Skipping
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger, MYM-type 2 [Source:HGNC Symbol;Acc:12989]
Coordinates
chr13:20656156-20657916:+
Coord C1 exon
chr13:20656156-20656270
Coord A exon
chr13:20656921-20657172
Coord C2 exon
chr13:20657796-20657916
Length
252 bp
Sequences
Splice sites
3' ss Seq
AATAGTTCTCTCTATTTAAGGGT
3' ss Score
8.37
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
TATTTGTGTGGAAGTAATCGAAAAGACAACATATTTATTGATCCTGGATACCAAACATTTGAGCAAGAATTGAATAAAATACTGCGAAGCTGGCAACCAAGCATACTTCCAGATG
Seq A exon
GGTCAATATTCTCTCGAGTTGAAGAAGACTATCTCTGGAGGATAAAACAACTAGGATCACACTCTCCAGTAGCTCTTCTGAATACACTGTTCTACTTTAACACTAAGTATTTTGGCCTGAAAACAGTGGAACAACACTTAAGACTTTCCTTTGGCACTGTGTTTAGGCATTGGAAAAAAAATCCTTTAACGATGGAAAACAAAGCGTGTCTTCGATACCAAGTGTCTTCCTTGTGTGGAACAGATAATGAAG
Seq C2 exon
ATAAAATTACTACTGGAAAAAGAAAACATGAAGATGATGAGCCAGTATTTGAACAAATTGAAAACACAGCCAATCCTTCCAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-'39-45,'39-41,41-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.488
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
PF120123=DUF3504=PU(48.8=98.8)
C2:
PF120123=DUF3504=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGTGGAAGTAATCGAAAAGACA
R:
AGACAAGTAGCATTCAAACATTTTCA
Band lengths:
228-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)