GgaEX7001301 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr1:178277321-178279248:-
Coord C1 exon
chr1:178279134-178279248
Coord A exon
chr1:178277824-178278075
Coord C2 exon
chr1:178277321-178277441
Length
252 bp
Sequences
Splice sites
3' ss Seq
TCTGTTATTTTTTTCTGAAGGAT
3' ss Score
8.44
5' ss Seq
AAGGTACTA
5' ss Score
7.52
Exon sequences
Seq C1 exon
TATTTGTATGGAAGTAACCGAAAAGACAACATCTTTATTGATCCAATCTACCAGACGTTTGAACAAGAATTAAATAAAATCCTTAGAAGTTGGCAACCAAGCATACTTCCAGATG
Seq A exon
GATCAATATTCTCTCGAGTGGAAGAGGATTATCTATGGAGGATTAAACAGCTAGGATCACATTCGCCAGTTGCTCTTCTGAATACTCTGTTCTACTTTAACACCAAGTATTTTGGTCTGAAAACAGTGGAGCAGCACTTAAGACTTTCTTTTGGCACTGTTTTCAGACAGTGGAAAAAAAATCCTCTAACAATGGAAAGCAAAGCTTGTCTTCGATATCAGGTGTCTTCCCTGTGCAGAGCTGATAGTGAAG
Seq C2 exon
ATAAAATTACTACTGGGAAAAGGAAACATGAAGATGATGAACCAGTATTTGAACAGATTGAAAACACGTCTGATCCAACTAGATGCCCTGTGAAACTGTTTGAGTGCTATCTGTCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139-'53-54,'53-53,56-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.463
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
PF120123=DUF3504=PU(48.8=98.8)
C2:
PF120123=DUF3504=FE(23.3=100)
Main Skipping Isoform:
ENSGALT00000043420fB4315
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTATGGAAGTAACCGAAAAGACA
R:
AGACAGATAGCACTCAAACAGT
Band lengths:
228-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]