MmuEX6041788 @ mm9
Exon Skipping
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:57575017-57577139:+
Coord C1 exon
chr14:57575017-57575131
Coord A exon
chr14:57575689-57575940
Coord C2 exon
chr14:57577019-57577139
Length
252 bp
Sequences
Splice sites
3' ss Seq
AGTAGTTTTTTCTATTTAAGGGT
3' ss Score
6.56
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
TACTTATGTGGTAGTAATCGAAAGGACAACATATTTATTGATCCAGGATACCAGATGTTTGAGCAAGAACTGAATAAAATACTCCGAAGTTGGCAACCAAGCATACTTCCAGATG
Seq A exon
GGTCAATTTTCTCTCGAGTTGAAGAAGACTATCTCTGGAGGATAAAACAACTAGGATCCCACTCTCCAGTAGCACTTTTGAATACCCTATTCTACTTTAACACTAAGTATTTTGGCCTGAAAACAGTGGAACAACACTTAAGACTTTCCTTTGGCACTGTGTTTAGGCATTGGAAAAAAAATCCTTTAACAATGGAAAATAAAGCATGTCTTCGCTATCAGGTGTCTTCCTTATGTGGAACAGACAATGAAG
Seq C2 exon
ATAAAATTGCTACTGGAAAACGAAAACATGAAGATGATGAGCCAGTATTTGAACAAGTTGAAAACACAGCCAACCCTTCTAGATGTCCTGTGAAAATGTTTGAATGCTACTTGTCTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945-'29-32,'29-29,30-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.506
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
PF120123=DUF3504=PU(48.8=98.8)
C2:
PF120123=DUF3504=FE(23.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTATGTGGTAGTAATCGAAAGGAC
R:
ACAAGTAGCATTCAAACATTTTCACA
Band lengths:
228-480
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: