BtaEX6056674 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003922 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:HGNC Symbol;Acc:HGNC:29810]
Coordinates
chr12:36611240-36614644:-
Coord C1 exon
chr12:36614558-36614644
Coord A exon
chr12:36613052-36613206
Coord C2 exon
chr12:36611240-36611394
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTCCTTTACTCCTGACACAGGCT
3' ss Score
5.33
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
AACTTTTTAACTACTGTGGCTATTCTTTTGGAAGCAGGAGCTTTTGTAAACGTCCAGCAGAACAATGGTGAGACGGCGCTAATGAAG
Seq A exon
GCTTGTAAAAGAGGAAACTCAGACATTGTCCGGCTGGTCATTGAATGTGGAGCTGACTGCAATATTCTGTCAAAGCACCAGAACAGTGCGCTGCATTTTGCAAAGCAGTGCAACAACGTGCTGGTGTATGACCTGCTGAAGAGCCACTTAGAGAC
Seq C2 exon
ACTTTCGAGAGTAGCTGAAGAAACTATCAAGGATTACTTTGAAGCACGTCTTGCGCTACTGGAACCAGTCTTCCCAATAGCGTGCCATCGCCTCTGTGAGGGGCCAGATTTCTCAATGGATTTCAATTACAGACCCCCACAGACTATACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003922-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(30.1=100)
A:
PF127962=Ank_2=FE(54.8=100)
C2:
PF127962=Ank_2=PD(5.4=9.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTTTTAACTACTGTGGCTATTCT
R:
CTTCTGGTATAGTCTGTGGGGGT
Band lengths:
242-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]