MmuEX0029505 @ mm9
Exon Skipping
Gene
ENSMUSG00000079184 | Mphosph8
Description
M-phase phosphoprotein 8 [Source:MGI Symbol;Acc:MGI:1922589]
Coordinates
chr14:57307866-57312415:+
Coord C1 exon
chr14:57307866-57307952
Coord A exon
chr14:57309744-57309898
Coord C2 exon
chr14:57312261-57312415
Length
155 bp
Sequences
Splice sites
3' ss Seq
ACTCCTCTTTCCTGCCCTAGGCA
3' ss Score
10.94
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
AACTTTTTAACAACTGTAGCTATTCTTTTGGAAGCTGGAGCTTTTGTGAATGTTCAGCAAAGCAATGGTGAGACTGCGCTCATGAAA
Seq A exon
GCATGCAAAAGAGGAAATTCGGACATTGTCCGCCTTGTGATTGAATGTGGAGCTGACTGCAACATTTTGTCAAAGCACCAAAATAGTGCATTGTACTTTGCAAAGCAGTGTAATAATGTGCTTGTATATGAACTGCTGAAGAGCCACTTGGAGAC
Seq C2 exon
ACTTTCCAGAGTTGCAGAAGAAACAATCAGGGATTACTTTGAATCTCGCCTTGCTCTACTGGAACCTGTTTTCCCAATAGCATGCCATCGGCTCTGTGAGGGGCCGGATTTCTCAACAGATTTCAATTACATGCCCCCTCAGAACATGCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079184_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(20.0=65.5),PF0002325=Ank=PU(21.2=24.1)
A:
PF0002325=Ank=PD(72.7=46.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACTGTAGCTATTCTTTTGGAA
R:
CTTCAGGCATGTTCTGAGGGG
Band lengths:
234-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types