GgaEX0025510 @ galGal4
Exon Skipping
Gene
ENSGALG00000017145 | MPHOSPH8
Description
M-phase phosphoprotein 8 [Source:RefSeq peptide;Acc:NP_001164636]
Coordinates
chr1:178471047-178474940:-
Coord C1 exon
chr1:178474854-178474940
Coord A exon
chr1:178473127-178473281
Coord C2 exon
chr1:178471047-178471201
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTTCTTGTTGCTTGGCACAGGCA
3' ss Score
5.56
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
AATTTTCTAACAACAGTGGCTATTCTTCTGGAAGCTGGAGCGTATGTGAACATGCAGCAGAGCAGTGGTGAAACTGCATTAATGAAG
Seq A exon
GCATGTAAAAGAGGAAATTCGGACATCGTGCGACTTATGATTGAAAGCGGAGCAGACTGTAACATTTTGTCAAAGCATCAGAACAGTGCACTACATTTTGCTAAGCAGTGTAACAATGTCCTGGTGTACGAACAGCTCAAGAGTCATTTGGAAAC
Seq C2 exon
ACTCTCAAGAGTAGCAGAAGATACCATCAGGGACTATTTTGAAGCTCGCCTTGTTTTGCTGGAGCCAGTCTTCCCAATTGCTTGTCACCGTCTCTGCGAAGGGCCAGACTTCTCCACAGACTTCAACTATAAACCCCCACAGAATGTGCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145_MULTIEX1-2/5=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(20.0=65.5)
A:
PF127962=Ank_2=FE(54.8=100)
C2:
PF127962=Ank_2=PD(5.4=9.4)
Main Skipping Isoform:
ENSGALT00000027690fB9517
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTCTAACAACAGTGGCTATTCTT
R:
CACATTCTGTGGGGGTTTATAGT
Band lengths:
234-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]