GgaEX0025510 @ galGal3
Exon Skipping
Gene
ENSGALG00000017145 | MPHOSPH8
Description
NA
Coordinates
chr1:183530289-183534182:-
Coord C1 exon
chr1:183534096-183534182
Coord A exon
chr1:183532369-183532523
Coord C2 exon
chr1:183530289-183530443
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTTCTTGTTGCTTGGCACAGGCA
3' ss Score
5.56
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
AATTTTCTAACAACAGTGGCTATTCTTCTGGAAGCTGGAGCGTATGTGAACATGCAGCAGAGCAGTGGTGAAACTGCATTAATGAAG
Seq A exon
GCATGTAAAAGAGGAAATTCGGACATCGTGCGACTTATGATTGAAAGCGGAGCAGACTGTAACATTTTGTCAAAGCATCAGAACAGTGCACTACATTTTGCTAAGCAGTGTAACAATGTCCTGGTGTACGAACAGCTCAAGAGTCATTTGGAAAC
Seq C2 exon
ACTCTCAAGAGTAGCAGAAGATACCATCAGGGACTATTTTGAAGCTCGCCTTGTTTTGCTGGAGCCAGTCTTCCCAATTGCTTGTCACCGTCTCTGCGAAGGGCCAGACTTCTCCACAGACTTCAACTATAAACCCCCACAGAATGTGCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017145-'15-19,'15-16,16-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(20.0=65.5),PF0002325=Ank=PU(21.2=24.1)
A:
PF127962=Ank_2=FE(54.8=100)
C2:
PF127962=Ank_2=PD(5.4=9.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTCTAACAACAGTGGCTATTCTT
R:
CACATTCTGTGGGGGTTTATAGT
Band lengths:
234-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]