DreEX6036008 @ danRer10
Exon Skipping
Gene
ENSDARG00000005576 | mphosph8
Description
M-phase phosphoprotein 8 [Source:ZFIN;Acc:ZDB-GENE-050309-191]
Coordinates
chr9:21659432-21660635:-
Coord C1 exon
chr9:21660549-21660635
Coord A exon
chr9:21659705-21659859
Coord C2 exon
chr9:21659432-21659589
Length
155 bp
Sequences
Splice sites
3' ss Seq
GACTATGTTGTTTTTCTAAGGCT
3' ss Score
7.19
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
AACTTCTTGACGACAGTGGCCATTCTTCTGGAGGCAGGAGCTTTTGTAAATGCTCAAACTCTGGGTGGAGAAACGGCTCTCATGAAG
Seq A exon
GCTTGTAAGAGGGGCAATGCAGATGTGGTTCGCCTCCTGCTGGAATATGGAGCTGACTGCAACATCCTATCCAAACACAAGAACACTGCCTTGTACTATGCCAAACTCAGTAACAATCTGATGGTGTATGATCTGATCAAAGACCACATGCAGAC
Seq C2 exon
GTTATCAACAGTAGCGGAGGAGACAATCAGAGCTTATTTTGAAACCCGACTGGCTCTGCTGGAACCTGTATTTCCTTTGGCTTGCCACAGATTGTGTGAGGGACCAGACTTTTCACTAGAGTTCAATTACAAACCCCCACAACACGCACCAGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005576-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(32.9=96.6)
A:
PF127962=Ank_2=FE(60.0=100)
C2:
PF127962=Ank_2=PD(4.7=7.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCTTGACGACAGTGGCC
R:
CTTCTCCTGGTGCGTGTTGTG
Band lengths:
245-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]