BtaEX6057084 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018313 | MBNL2
Description
Bos taurus muscleblind-like 2 (Drosophila) (MBNL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099710]
Coordinates
chr12:78409040-78445751:+
Coord C1 exon
chr12:78409040-78409093
Coord A exon
chr12:78409734-78409887
Coord C2 exon
chr12:78444069-78445751
Length
154 bp
Sequences
Splice sites
3' ss Seq
ATCCGATTCTTCACTTCTAGGCC
3' ss Score
8.8
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
Exon sequences
Seq C1 exon
ACTCAGTCGACTGCCAAAGCAATGAAGCGACCTCTCGAAGCATCTGTAGACCTG
Seq A exon
GCCTTCCCTCCTGGTGCTCTTCATCCTTTACCAAAGAGACAAGCACTTGAAAAAAGCAACGGTGCGAGCACCGTGTTTAACCCCAGCGTCTTGCAGTACCAGCAGGCTCTCACCAGTGCGCAGCTGCAGCAGCACACCGCGTTCATCCCGACAG
Seq C2 exon
ATAATTCTGAAATAATCAGCAGGAACGGAATGGAATGCCAAGAATCTGCATTGAGAATAACTAAACATTGTTACTGTACATACTATCCTGTTCCCTCCTCAATAGAATTGCCACAAACTGCATGCTAAATAAAGATTTAGTTCTTCTGGACAGACCACAACTCTAAGAAGCTAGTGCTGCTATATCATATATGAGTATTAAATATGGTATGCTTAGTATATTCCAACCTAAGATAGTTAACTACCTGAGACCAGCTGTGATGTTAAAGGACATAAAGGATAAAGTTTACTTTTAAAGGGTTTCTAAACATAGTTTCTGTCCTAGGAATATTGTCTTCTCTCCATAACTATAGCTGATGCAGAAAGTCCAACCAATTTATTCATTTCGACTCAGAATATTTCAAAGTTAGCAATAAACAATTAGCATTAGTTAAAAAAAAAAGAAAAAGAAAGAAAGAAAAAAAACCTATTCCAGGGGCAGGTTCAATTCTAACTTCAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018313-'13-20,'13-16,14-20=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (disopred):
C1=0.986 A=0.159 C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGACCTCTCGAAGCATCT
R:
AGGTTGGAATATACTAAGCATACCA
Band lengths:
258-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]