GgaEX6005627 @ galGal4
Exon Skipping
Gene
ENSGALG00000016890 | MBNL2
Description
muscleblind-like 2 isoform 5 [Source:RefSeq peptide;Acc:NP_001156846]
Coordinates
chr1:144592762-144598248:-
Coord C1 exon
chr1:144598195-144598248
Coord A exon
chr1:144597391-144597544
Coord C2 exon
chr1:144592762-144592856
Length
154 bp
Sequences
Splice sites
3' ss Seq
ACTAACTCTCTTATTCACAGGCC
3' ss Score
8.45
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ACTCAGTCGACTGCCAAAGCAATGAAGCGACCTCTCGAAGCAACTGTAGACCTG
Seq A exon
GCCTTTCCTCCCGGTGTTCTTCACCCTTTACCAAAGAGACAAGCACTTGAAAAAAGCAATGGTGCCAGTGCCGTTTTCAATCCCAGTGTCTTGCACTATCAACAGGCTCTTGCCAATGCTCAGTTGCAGCAACATGCAGCGTTCATCCCGACAG
Seq C2 exon
TACCCATGATGCACAACGCTACGGCCGCCACTGTCTCTGCAGCAACAACTCCTGCAACAAGTGTTCCCTTCGCCGCAACAGCCACAGCAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016890-'7-11,'7-9,8-11=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0273412=Dak2=PD(18.0=88.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGTCGACTGCCAAAGC
R:
CTGATTTGCTGTGGCTGTTGC
Band lengths:
149-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]