DreEX6029896 @ danRer10
Exon Skipping
Gene
ENSDARG00000018460 | mbnl2
Description
muscleblind-like splicing regulator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9582]
Coordinates
chr1:2053270-2057967:+
Coord C1 exon
chr1:2053270-2053323
Coord A exon
chr1:2053666-2053822
Coord C2 exon
chr1:2057873-2057967
Length
157 bp
Sequences
Splice sites
3' ss Seq
GTATGCTCTTTCACGCTCAGGCG
3' ss Score
6.79
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ACTCAGTCGACTGCCAAAGCAATGAAGCGACCCCTCGAGGCATCTGTAGATCTG
Seq A exon
GCGTTTCCGCATGGAGTCCTGCAGCCCCTACCAAAGAGACCAGCACTAGAAAAGAGTAACGGGGCCAGCACGCTCTTCAACCCCAGTGTCTTGCACTACCAACAGGCTTTGGCCAGCGCACAGCTTCAGCAGCCCACCGCTGCGTTCTTTCCCACAG
Seq C2 exon
TACCCATGATGTACAGTGCTACGCCTGCTACTGTCTCTGCAGCAACAACTCCTGCCACAAGTGTCCCCTACGCAACAACAGCACCAGCCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018460-'14-19,'14-17,15-19=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=0.759 C2=0.971
Domain overlap (PFAM):
C1:
PF149201=MTBP_C=FE(11.3=100)
A:
PF149201=MTBP_C=PD(0.7=1.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAGTCGACTGCCAAAGC
R:
TGATTGGCTGGTGCTGTTGTT
Band lengths:
148-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]