BtaEX6057361 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018237 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr12:88176590-88215843:+
Coord C1 exon
chr12:88176590-88176670
Coord A exon
chr12:88176952-88177157
Coord C2 exon
chr12:88215741-88215843
Length
206 bp
Sequences
Splice sites
3' ss Seq
TGTTTTACTTCTCTCCTTAGAAA
3' ss Score
10.27
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
TTATTAAAAAAGAAAGGAAATTCTACATTTCTTCAAAGACTCGACCGGGGAGGTCCAGCCACCATTGCATCGCAACTCAGG
Seq A exon
AAAACTCTGACGGATATTACTGGGAAACTTCAGAAGTGCACTCCACACTTTATTCATTGCATCAAGCCCAATAACTCAAAGCTGCCAGACACCTTTGATAACTTCTACGTGTCCGCTCAGCTGCAGTATGTCGGGATCCTGGAGATGGTGAAGAGCATCCGACACGGGTACCCTGTCCGCCTTTCCTTCTCCGATTTCCTGTCGAG
Seq C2 exon
GTACAGGCCCTTGGCCGAGACCCTCCCTGGCAACGAGAGGACACTGCCCGCCGAGGAGAGGTGCCGGCTGGCCCTGAAGCACTGCCCGTTACCAGGGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018237-'35-35,'35-33,37-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
PF0006316=Myosin_head=FE(9.3=100)
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTACATTTCTTCAAAGACTCGACC
R:
CTGCCACCCTGGTAACGG
Band lengths:
164-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]