RnoEX6056285 @ rn6
Exon Skipping
Gene
ENSRNOG00000016483 | Myo16
Description
myosin XVI [Source:RGD Symbol;Acc:621561]
Coordinates
chr16:84683198-84713657:-
Coord C1 exon
chr16:84713577-84713657
Coord A exon
chr16:84713085-84713290
Coord C2 exon
chr16:84683198-84683300
Length
206 bp
Sequences
Splice sites
3' ss Seq
ACCTTCTTCTCTCTCCATAGAAA
3' ss Score
12.76
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TTATTAAAAAAGAAGGGAACTTGCACATTCCTACAAAGACTGGAACGCGGAGACCCCGCCACTACTGCGTCGCAACTCACG
Seq A exon
AAATCTCTGGCAGACATCACTGCAAAGCTGCAGAAGGGCAGTCCGCACTTCATCCTTTGCGTCAAGCCTAATACCTCACAGCTACCTGGTGTGTTCGATCACTTCTACGTGTCTGCCCAACTGCAGTACCTCGGTGTCCTAGGGCTGGTGAGGCTGTTCCGCTATGGGTACCCAGTGCGCCCTTCCTTCGAGGACTTCCTGTCCAG
Seq C2 exon
ATATGAGCCACTGGCTTCTGTCCTCCTGGGTGAGAAGAAGGGTCAGCCCGCCGAGGAGAGATGTCGGCTGGTTCTCCAGCGGTGTAAACTACAAGGTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016483-'29-31,'29-30,30-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
PF0006316=Myosin_head=FE(9.3=100)
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAACTTGCACATTCCTACA
R:
ACCTTGTAGTTTACACCGCTGG
Band lengths:
165-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]