DreEX0048576 @ danRer10
Exon Skipping
Gene
ENSDARG00000078582 | myo16
Description
myosin XVI [Source:ZFIN;Acc:ZDB-GENE-070912-470]
Coordinates
chr9:8102330-8132885:+
Coord C1 exon
chr9:8102330-8102410
Coord A exon
chr9:8111751-8111956
Coord C2 exon
chr9:8132783-8132885
Length
206 bp
Sequences
Splice sites
3' ss Seq
GCTTTTCTTCCTCCTTCCAGAAC
3' ss Score
11.46
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTGCTGAAGAAGAAGGGTGCGTCGTCGTTCCTCCAGAGACTAGAGCGCTGTGGACCAATCACTGTGGCTGTGCAGCTCAAG
Seq A exon
AACTCTCTGTGTGAGATCACCAGTAAACTGCAGTCCTGCACACCCCACTTCATCCAGTGTGTCAGACCCAACAATGCCAGTAAGCCGGATGTGTTCGACAGCTTCCATGTGTCCTCGCAGCTCCAATATGTGGGGGTTCTGGAGATGGTCCGGATGATCCGCTATGGATACCCAGTACGACTGTCTTTCTCTAGCTTCCTGAGCAG
Seq C2 exon
GTACAGAGAGCTGGTGGACACCATCATCACTGACAGGAAGAAAGCAACCACAGAGGAGAAGTGCCGGCACATTCTGCTGCATTGTAAACTCCAGGGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078582_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
PF0006316=Myosin_head=FE(9.3=100)
C2:
PF0006316=Myosin_head=FE(4.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAAGAAGAAGGGTGCGTCG
R:
CTGCCATCCCTGGAGTTTACA
Band lengths:
181-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]