HsaEX6041028 @ hg19
Exon Skipping
Gene
ENSG00000041515 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:29822]
Coordinates
chr13:109707394-109753235:+
Coord C1 exon
chr13:109707394-109707474
Coord A exon
chr13:109707738-109707943
Coord C2 exon
chr13:109753133-109753235
Length
206 bp
Sequences
Splice sites
3' ss Seq
GGTTCTACTTCTCTCCTTAGAAA
3' ss Score
8.09
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TTATTAAAAAAGAAAGGAACTTCTACATTTCTTCAAAGATTGGAACGAGGAGATCCAGTCACCATAGCATCACAACTCAGG
Seq A exon
AAATCACTAATGGATATTATTGGAAAACTTCAGAAGTGCACTCCACACTTCATTCATTGCATCAGGCCCAATAACTCAAAGCTGCCAGATACTTTTGATAATTTTTACGTGTCTGCTCAGCTACAATATATTGGGGTCCTGGAGATGGTGAAGATCTTCCGATATGGATACCCTGTTCGCCTTTCCTTCTCGGATTTCCTGTCAAG
Seq C2 exon
GTATAAGCCACTGGCTGATACATTCCTGCGTGAGAAGAAGGAACAGTCAGCTGCCGAGCGATGTCGACTTGTTCTCCAGCAGTGTAAATTACAAGGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000041515-'36-36,'36-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
PF0006316=Myosin_head=FE(10.7=100)
C2:
PF0006316=Myosin_head=FE(4.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTACATTTCTTCAAAGATTGGA
R:
GCCAGCCTTGTAATTTACACTGC
Band lengths:
164-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)