GgaEX0024952 @ galGal3
Exon Skipping
Gene
ENSGALG00000016837 | MYO16
Description
NA
Coordinates
chr1:142567827-142587299:+
Coord C1 exon
chr1:142567827-142567907
Coord A exon
chr1:142568207-142568412
Coord C2 exon
chr1:142587200-142587299
Length
206 bp
Sequences
Splice sites
3' ss Seq
TTTGTTCTGTTTTTCTACAGAAA
3' ss Score
11.25
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CTGTTGAAAAAGAAAGGGACATCCTCATTTCTTCAGAAGCTGGAACGAGGGGGCCCAACCACTGTGGCAGTACAACTCAGG
Seq A exon
AAATCACTCATAGATATTATTGGGAAGCTACAGAACTGCACACCACATTCTATTCATTGTATAAAGCCTAATAACTCCAAGTTGCCGGATACTTTTGACAATTTTTATGTGTCTGCTCAGCTGCAGTATATTGGTGTCCTAGACATGGTCAAAATCATACGATACGGATATCCCTTTCGTTTCTCTTTCACCGACTTCTTGTCAAG
Seq C2 exon
GTATAAAGATTTGGCTGATACAGCAGCAGGAGAGAAGAAGTTGTCTGCCAAGGAGAGATGTCGTCTTGTTCTCCAGCAGTGTAAATTACAAGGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016837-'25-28,'25-27,26-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.6=100)
A:
PF0006316=Myosin_head=FE(9.3=100)
C2:
PF0006316=Myosin_head=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGAAAAAGAAAGGGACATCC
R:
TGCCAGCCTTGTAATTTACACTG
Band lengths:
180-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]