BtaEX6057364 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018237 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr12:88154407-88174286:+
Coord C1 exon
chr12:88154407-88154607
Coord A exon
chr12:88168943-88169018
Coord C2 exon
chr12:88174111-88174286
Length
76 bp
Sequences
Splice sites
3' ss Seq
GCTACTTTCTTTTATTATAGGTA
3' ss Score
8.88
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAGCCTTCTGGATTTCTCTCTCTATTGGACGAAGAAAGTCAAATGATTTGGTCAGTGGAACCAAGTCTTCCCAAAAAGCTCCACGGTCTGCTAGAATCCTCAAACACAAATGCAGTCTACTCCCCCGTGAAGGATGGAAATGGGAACCTCGCCCTCCGAGACCAAGGCGCAGCTTTCACTGTCATGCACTACGCGGGCCGG
Seq A exon
GTAATGTATGAAGCTGTTGGAGCAATTGAAAAAAATAAAGACTCCCTTTCACAGAATCTTCTATTTGTAATGAAAA
Seq C2 exon
CTAGTGAAAACGTCGTGATCAATCATTTGTTCCAGTCGAAACTGTCACAAACAGGAGCCCTCGTATCGTCCTCTCCTTCTTTTAAATTCAGAGGACATAAATCTGCCCGGCTCAGTAAGAGAATGACAGCGTCTTCAATGATGGGAGAAAACAGGAATTATCTAGAACTTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018237-'32-31,'32-29,33-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.0=100)
A:
PF0006316=Myosin_head=FE(3.4=100)
C2:
PF0006316=Myosin_head=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCAGTCTACTCCCCCGT
R:
GAGAGGACGATACGAGGGCTC
Band lengths:
169-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]