RnoEX6056282 @ rn6
Exon Skipping
Gene
ENSRNOG00000016483 | Myo16
Description
myosin XVI [Source:RGD Symbol;Acc:621561]
Coordinates
chr16:84717443-84742992:-
Coord C1 exon
chr16:84742792-84742992
Coord A exon
chr16:84720635-84720710
Coord C2 exon
chr16:84717443-84717615
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTATTTTTGTCTCATTACAGGTA
3' ss Score
11.1
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAACCATCAGGATTCTTCTCCCTATTGGACGAGGAGAGTCAAGCGATTTGGTCAGTGGAGCCAAACCTTCCCAGGAAGCTGCAGGGTCTCCTGGAATCATCAAACACAAATGCAGTCTATTCCCCCATGAAGGACGGCAACGGGAATGTTGCTTTCAAAGGTCAAGGCGCAGCCTTCACTGTCATGCACTACGCAGGAAGG
Seq A exon
GTAACGTATGAAATCAGAGGAGCGGTGGAAAGGAATAAAGACTCTCTTTCACAGAACCTCCTATTTGTAATGAAAA
Seq C2 exon
CAAGTGAAAATGTCGTGATCAGTCACCTGTTCCAGTCAAAACTCTCACCGACGGGATCGCTCATATCTTCCTACCCATCCTTTAAATTTGGAGGACACAAATCCAGCCTGCTCAGTAAGAGAATTGCCTCTTCAATGGTTGGAGTGAACAAGAATTACCTAGAACTTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016483-'23-28,'23-27,24-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.0=100)
A:
PF0006316=Myosin_head=FE(3.4=100)
C2:
PF0006316=Myosin_head=FE(7.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTTTCAAAGGTCAAGGCG
R:
CTGAGCAGGCTGGATTTGTGT
Band lengths:
168-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]