DreEX6035109 @ danRer10
Exon Skipping
Gene
ENSDARG00000078582 | myo16
Description
myosin XVI [Source:ZFIN;Acc:ZDB-GENE-070912-470]
Coordinates
chr9:8089758-8090932:+
Coord C1 exon
chr9:8089758-8089958
Coord A exon
chr9:8090143-8090218
Coord C2 exon
chr9:8090760-8090932
Length
76 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGTCTTGTATTGCAGATG
3' ss Score
10.82
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
AAGCCTCAGGGAGTGCTGTGTATCATTGATGAGGAGAGTCAGTCCCTCAGGCCATGTGAAGTCAACCTTTACAAGCGCCTCCAGATCCAGCTGGATTCCTCCGCTACAGACGCCGTCTCCCTCACAACCAAGGATGGCAATGGGAACCCCCCGCCCAAAGACCAGGGGCCATCGTTTACCGTCACACACTTTGCCGGCAAG
Seq A exon
ATGACCTATGACCTCACCGGATCACTGGACAGGAACAAGGATGTTCTTCCTCAAAACATCTTGTTTGTTATGAAAA
Seq C2 exon
CGAGTGAGAACGTGCTCATCCATCAAATGTTCCAGTGTAAACTGACTCAGACCGGCTCACTGGTTCCTCAACACCAGCGCATGAAGCTCCGTGGACCCAAAGGCACACTGATAAACAAAAGCACCACGCTAAATCCTGCCAGAGACGCCAAGAAATATGTGGAACTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078582-'28-31,'28-30,29-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=0.000 C2=0.342
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.0=100)
A:
PF0006316=Myosin_head=FE(3.4=100)
C2:
PF0006316=Myosin_head=FE(7.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCGTTTACCGTCACACA
R:
CTCTGGCAGGATTTAGCGTGG
Band lengths:
178-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]