GgaEX0024951 @ galGal4
Exon Skipping
Gene
ENSGALG00000016837 | MYO16
Description
myosin XVI [Source:HGNC Symbol;Acc:HGNC:29822]
Coordinates
chr1:137632731-137648850:+
Coord C1 exon
chr1:137632731-137632931
Coord A exon
chr1:137646382-137646457
Coord C2 exon
chr1:137648675-137648850
Length
76 bp
Sequences
Splice sites
3' ss Seq
GTCACAATATTTTATTATAGGTT
3' ss Score
7.03
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAACCATCAGGCTTTTTGTCGATGCTAGATGAAGAAAGCCAATCTAATTGGTCAGTGGAACAGAGTCTTTCTAAACGGATTCAGTCTTACCTGGATACATCAGACACAAATATAGTGTATTCCTCCACAAAAGATGGAAATGGCAACCTTGCACCAAAGGAACAGGGCTCTACCTTCACTGTTATGCATTATGCTGGCAGG
Seq A exon
GTTACTTACGAAATTGCTGGTGCAGTAGAAAAAAATAAAGATTCCCTTTCACAAAATCTCATATTTGTAATGAAAA
Seq C2 exon
CCAGCGAAAATGTAGTCATCAATCAATTGTTCCAGTCCAAACTGACACAGACTGGATCACTCGTTCCTCCATATCATTCCCTTAAGTTCAAAGGATGTAAAGCAGCAATGCTGAATAAAAAAACATCAGTAGCCTGTGCAAGTGGAGAAACAAAGAAATACGTGGAGCTCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016837_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(12.0=100)
A:
PF0006316=Myosin_head=FE(3.4=100)
C2:
PF0006316=Myosin_head=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTATGCATTATGCTGGCAGG
R:
GTTTCTCCACTTGCACAGGCT
Band lengths:
173-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]