MmuEX6034263 @ mm10
Exon Skipping
Gene
ENSMUSG00000039057 | Myo16
Description
myosin XVI [Source:MGI Symbol;Acc:MGI:2685951]
Coordinates
chr8:10475988-10502939:+
Coord C1 exon
chr8:10475988-10476188
Coord A exon
chr8:10499117-10499192
Coord C2 exon
chr8:10502767-10502939
Length
76 bp
Sequences
Splice sites
3' ss Seq
CTATTTTTGTCTCATTACAGGTC
3' ss Score
11.32
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AAACCATCAGGATTCTTCTCCTTACTGGATGAGGAGAGTCAAGTGATTTGGTCAGGGGAGCCAAACCTCCCCAGAAAGCTGCAGGGTCTCCTGGAATCCTCAAACACAAATGCAGTCTACTCCCCTGTGAAGGACGGCAATGGAAATGTTGCTTTCAAAGGTCAAGGTGCGGCCTTCACTGTCATGCACTACGCAGGAAGG
Seq A exon
GTCATGTATGAAATGGGAGGAGCAGTTGAAAGAAACAAAGACTCTCTTTCACAGAACCTCTTATTTGTAATGAAAA
Seq C2 exon
CAAGTGAAAATGTCGTGATCAGTCATTTGTTCCAGTCAAAGCTGTCACAAACAGGATCGCTCATATCTTCCTACCCATCCTTTAAATTTGGAGGACACAAATCCACCCTGCTTAGCAAGAGAACCGCCTCTTCCATGGTTGGAGTAAATAAGAATTACCTGGAACTTAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039057-'30-41,'30-36,32-41=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(15.0=100)
A:
PF0006316=Myosin_head=FE(3.4=100)
C2:
PF0006316=Myosin_head=FE(12.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTCAAAGGTCAAGGTGCG
R:
CGGTTCTCTTGCTAAGCAGGG
Band lengths:
177-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types