BtaEX6057426 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025210 | COL4A2
Description
collagen, type IV, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2203]
Coordinates
chr12:89161329-89163464:+
Coord C1 exon
chr12:89161329-89161445
Coord A exon
chr12:89162580-89162771
Coord C2 exon
chr12:89163178-89163464
Length
192 bp
Sequences
Splice sites
3' ss Seq
GCGGCCTCTGTCTCGCCCAGGGG
3' ss Score
6.65
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
GTTTCCGTGGGGCGCAGGGCAAGGCCGGGCCCCAGGGACGAGGCGGCGTGTCGGCCATTCCGGGATTCCGTGGAGACCAGGGGCCCGTGGGGCTGCAGGGACCGGTGGGCTTCGAAG
Seq A exon
GGGAGCCGGGCCGCCCCGGAAGCCCCGGCCTGCCCGGCATGCCCGGCCGAAGCATCAGCATCGGGTACCTCCTGGTGAAGCACAGCCAGACCGACAAGGAGCCCATGTGCCCCGTGGGCATGAACAAGCTCTGGAGCGGGTACAGTCTGCTCTACTTCGAGGGCCAGGAGAAGGCCCACAACCAGGACCTGG
Seq C2 exon
GGCTGGCGGGCTCCTGCCTGGCACGGTTCAGCACCATGCCCTTCCTGTACTGCAACCCCGGGGACGTCTGCTACTATGCCAGCCGTAACGACAAGTCCTACTGGCTGTCCACCACCGCCCCGCTGCCCATGATGCCCGTGGCCGAGGAGGACATCCGGCCCTACATCAGCCGCTGCTCTGTGTGCGAGGCCCCGGCCGTCGCCATCGCAGTCCACAGCCAGGATGTCTCCATCCCCCACTGCCCGGCCGGGTGGCGCAGCTTGTGGATCGGATACTCCTTCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025210-'48-53,'48-52,49-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.246 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(41.2=52.5),PF0139113=Collagen=PU(60.0=82.5)
A:
PF0139113=Collagen=PD(38.2=32.3),PF0141314=C4=PU(39.8=66.2)
C2:
PF0141314=C4=PD(59.3=66.7),PF0141314=C4=PU(26.1=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCGGTGGGCTTCGAAG
R:
GAGACATCCTGGCTGTGGACT
Band lengths:
247-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]