DreEX6035193 @ danRer10
Exon Skipping
Gene
ENSDARG00000104110 | col4a2
Description
collagen, type IV, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-070725-3]
Coordinates
chr9:8894237-8899687:+
Coord C1 exon
chr9:8894237-8894353
Coord A exon
chr9:8897128-8897319
Coord C2 exon
chr9:8899401-8899687
Length
192 bp
Sequences
Splice sites
3' ss Seq
TAATCAATCTGAATTCTCAGGGA
3' ss Score
5.61
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GATTTGTAGGTCCAAGTGGACACAAGGGGATGCCAGGTCTTCCTGGAATACCAGGAAGTCCAGGCTTCCGTGGAGAACCTGGATCAATGGGCCACTCTGGTCTGCAAGGCGAACAAG
Seq A exon
GGACTCGAGGACGACCTGGTATGCCCGGTCCTCTTGGAATGGCTGGCCGCAGTGTGAACGTTGGCTATCTGCTGGTGAAGCACAGTCAGTCTGAGGAGATCCCCATGTGTCCTCAGGGCATGTCCTTGTTATGGATGGGTTACAGTCTTCTGTACTTCGAGGGCCAGGAAAAGGCCCACAACCAAGACCTGG
Seq C2 exon
GTCTAGCCGGATCATGCCTCCCCCGTTTTAACACCATGCCCTTTCTGTACTGTAATCCGGGAGACATATGCTACTACGCCAGCCGCAATGACAAATCCTATTGGCTGTCCACAACCCAGCCGATTCCCATGATGCCCGTAGAGGAGTCTGAAATAAAGCCGTACATCAGCCGCTGCTCTGTGTGTGAAGCTCCATCTGTGGCCATCGCCGTACACAGTCAAGATACAACCATTCCAAACTGCCCAGTCGGCTGGAGAAGCCTCTGGATTGGCTATTCCTTCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104110-'47-52,'47-51,48-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.215 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(39.0=57.5),PF0139113=Collagen=PU(61.0=90.0)
A:
PF0139113=Collagen=PD(37.3=33.8),PF0141314=C4=PU(39.8=66.2)
C2:
PF0141314=C4=PD(59.3=66.7),PF0141314=C4=PU(26.3=31.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGTGGACACAAGGGGAT
R:
CAGACTCCTCTACGGGCATCA
Band lengths:
257-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]