GgaEX0024959 @ galGal4
Exon Skipping
Gene
ENSGALG00000016843 | COL4A2
Description
collagen, type IV, alpha 2 precursor [Source:RefSeq peptide;Acc:NP_001155862]
Coordinates
chr1:138382793-138384487:+
Coord C1 exon
chr1:138382793-138382909
Coord A exon
chr1:138383704-138383895
Coord C2 exon
chr1:138384201-138384487
Length
192 bp
Sequences
Splice sites
3' ss Seq
TCTTCTCTCTTTCATCTAAGGCC
3' ss Score
7.93
5' ss Seq
TAGGTACGT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GTCTCAGAGGCTTACCTGGAGAACCAGGACTCCAGGGCAGAGGTGGCATTCCAGCTCCTCCTGGATCCAGAGGTGAACAAGGAGCAATGGGGTTTCAAGGTCCAGTGGGATTTGAAG
Seq A exon
GCCAGCCAGGTCGTCCTGGTAGCCCTGGGCTGCCAGGCATGCCGGGTCGCAGCGTTAGCATCGGCTACCTGCTGGTGAAGCACAGCCAGTCCGACCAAGAGCCAATGTGCCCGATTGGCATGAACAAACTCTGGAGTGGCTACAGCCTCCTGTACTTTGAGGGACAAGAGAAAGCACACAACCAGGACCTAG
Seq C2 exon
GGCTGGCTGGCTCATGCTTGGCTCGTTTCAGTACAATGCCATTCCTCTACTGTAACCCTGGGGATATTTGTTATTATGCAAATCGAAATGACAAATCCTACTGGCTCTCAACTACAGCACCTCTTCCAATGATGCCTGTGGCAGAAGAAGAAATTAGGCCATATATCAGCCGCTGCTCTGTGTGTGAGGCCCCAGCTGTGGCAATTGCTGTCCATAGCCAAGAAGCTTCTATTCCTCGCTGCCCTGAAGGCTGGCGCAGTTTATGGATTGGATATTCCTTCCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016843-'68-76,'68-74,69-76
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.277 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(40.7=55.0),PF0139113=Collagen=PU(61.7=92.5)
A:
PF0139113=Collagen=PD(36.7=33.8),PF0141314=C4=PU(39.8=66.2)
C2:
PF0141314=C4=PD(59.3=66.7),PF0141314=C4=PU(26.3=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGGGGTTTCAAGGTCCA
R:
GGCTATGGACAGCAATTGCCA
Band lengths:
253-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]