RnoEX0023264 @ rn6
Exon Skipping
Gene
ENSRNOG00000023972 | Col4a2
Description
collagen type IV alpha 2 chain [Source:RGD Symbol;Acc:1308085]
Coordinates
chr16:83389400-83391781:-
Coord C1 exon
chr16:83391665-83391781
Coord A exon
chr16:83390504-83390695
Coord C2 exon
chr16:83389400-83389686
Length
192 bp
Sequences
Splice sites
3' ss Seq
CACTTTCTCTTGTGCCCTAGGGG
3' ss Score
9.94
5' ss Seq
TGGGTAGGT
5' ss Score
6.86
Exon sequences
Seq C1 exon
GTTTCCGAGGGGCCCCCGGCAAGGCCGGTCCCCAGGGCAGAGGTGGTGTGTCTGCTGTTCCAGGGTTCCGGGGAGACCAAGGGCCCATGGGACACCAGGGTCCGATTGGCCAGGAAG
Seq A exon
GGGAGCCAGGCCGTCCAGGGAGCCCAGGCCTGCCAGGGATGCCAGGCCGCAGCGTAAGCATTGGCTACCTCCTGGTGAAGCACAGCCAGACGGACCAGGAACCCATGTGCCCCGTGGGCATGAACAAGCTCTGGAGTGGGTACAGCCTGCTGTATTTCGAGGGCCAGGAGAAAGCACATAATCAGGACCTGG
Seq C2 exon
GGCTGGCGGGCTCCTGCCTGGCACGCTTCAGCACCATGCCCTTCCTGTACTGCAATCCGGGTGACGTCTGCTACTACGCCAGCCGCAACGACAAGTCCTACTGGCTCTCCACCACGGCCCCACTGCCCATGATGCCCGTAGCTGAGGAGGAAATCAAACCCTACATCAGCCGCTGTTCGGTGTGTGAGGCTCCGGCCGTGGCCATTGCTGTCCACAGCCAAGATGTCTCTATACCCCACTGCCCCGCTGGGTGGCGGAGTTTGTGGATCGGATATTCATTCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023972-'51-50,'51-49,52-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.262 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(40.7=55.0),PF0139113=Collagen=PU(61.0=90.0)
A:
PF0139113=Collagen=PD(37.3=33.8),PF0141314=C4=PU(39.8=66.2)
C2:
PF0141314=C4=PD(59.3=66.7),PF0141314=C4=PU(26.1=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGGTGTGTCTGCTGTTC
R:
GCGGCTGATGTAGGGTTTGAT
Band lengths:
251-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]