MmuEX6034332 @ mm9
Exon Skipping
Gene
ENSMUSG00000031503 | Col4a2
Description
collagen, type IV, alpha 2 [Source:MGI Symbol;Acc:MGI:88455]
Coordinates
chr8:11443831-11446246:+
Coord C1 exon
chr8:11443831-11443947
Coord A exon
chr8:11444931-11445122
Coord C2 exon
chr8:11445960-11446246
Length
192 bp
Sequences
Splice sites
3' ss Seq
CACTTTCTCTTGGTCCCTAGGGG
3' ss Score
10.48
5' ss Seq
TAGGTAGGC
5' ss Score
7.72
Exon sequences
Seq C1 exon
GCTTCCGTGGGGCCCCAGGCAAGGCTGGGCCTCAGGGCAGAGGTGGCGTGTCTGCTGTTCCAGGGTTCCGGGGAGACCAAGGGCCCATGGGACACCAGGGTCCAGTTGGCCAGGAAG
Seq A exon
GGGAGCCAGGCCGTCCAGGGAGCCCAGGCCTGCCAGGGATGCCAGGCCGCAGTGTGAGCATCGGCTACCTCCTGGTGAAGCACAGCCAAACGGACCAGGAACCCATGTGCCCTGTGGGCATGAACAAGCTCTGGAGTGGGTACAGCCTGCTATATTTTGAGGGCCAGGAGAAAGCGCACAACCAGGACCTAG
Seq C2 exon
GACTGGCAGGCTCCTGCCTGGCACGCTTCAGCACCATGCCTTTCCTGTACTGCAATCCGGGTGACGTCTGCTACTATGCCAGCCGCAACGACAAGTCCTACTGGCTCTCCACCACGGCCCCTCTGCCCATGATGCCCGTGGCTGAGGAGGAAATCAAGCCCTACATCAGCCGCTGCTCTGTGTGCGAGGCTCCGGCCGTGGCCATTGCCGTGCACAGCCAGGATACCTCTATACCCCACTGCCCGGCTGGGTGGCGGAGTTTGTGGATCGGATATTCATTCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031503-'47-48,'47-47,48-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.262 C2=0.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(40.7=55.0),PF0139113=Collagen=PU(59.6=85.0)
A:
PF0139113=Collagen=PD(38.6=33.8),PF0141314=C4=PU(39.8=66.2)
C2:
PF0141314=C4=PD(59.3=66.7),PF0141314=C4=PU(26.1=31.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTGCTGTTCCAGGGTTC
R:
CGGCTGATGTAGGGCTTGATT
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: