BtaEX6057433 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025210 | COL4A2
Description
collagen, type IV, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2203]
Coordinates
chr12:89155305-89157932:+
Coord C1 exon
chr12:89155305-89155412
Coord A exon
chr12:89156321-89156392
Coord C2 exon
chr12:89157807-89157932
Length
72 bp
Sequences
Splice sites
3' ss Seq
ACCCTGAGGCTCCCCCACAGGTC
3' ss Score
6.21
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCTTTCCAGGACTCACAGGGCTCCAGGGGCCTCAGGGAGACCCGGGACGGGCCGGAGCGCCTGGCATCAAAGGAGACTCTGGCTGGCCGGGGAACCCAGGCTTACCAG
Seq A exon
GTCTGCCCGGACTCCGAGGCATCAGCGGATTGCACGGTCTGCCAGGCAGCAAAGGCTTCCCGGGATCCCCAG
Seq C2 exon
GTGCAGACGTCCACGGGGACCCCGGATTCCCAGGCCCTGCCGGGGATAAGGGTGACCCCGGAGAGCCCAACACCCTTCCAGGCCCCACGGGAGCCCCGGGACAGAAGGGCGAGCGTGGAGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025210-'40-44,'40-43,41-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.7=21.6),PF0139113=Collagen=FE(52.9=100),PF0139113=Collagen=PU(19.7=32.4)
A:
PF0139113=Collagen=FE(35.3=100),PF0139113=Collagen=FE(39.3=100)
C2:
PF0139113=Collagen=PD(5.9=9.3),PF0139113=Collagen=PD(39.3=55.8),PF0139113=Collagen=PU(53.4=90.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGCATCAAAGGAGACTC
R:
CACGCTCGCCCTTCTGTC
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]