HsaEX6041098 @ hg19
Exon Skipping
Gene
ENSG00000134871 | COL4A2
Description
collagen, type IV, alpha 2 [Source:HGNC Symbol;Acc:2203]
Coordinates
chr13:111144417-111147814:+
Coord C1 exon
chr13:111144417-111144524
Coord A exon
chr13:111145558-111145629
Coord C2 exon
chr13:111147689-111147814
Length
72 bp
Sequences
Splice sites
3' ss Seq
GATGAGTGACACCCCCGCAGGTT
3' ss Score
4
5' ss Seq
CAGGTACTC
5' ss Score
7.04
Exon sequences
Seq C1 exon
GCTTTCCAGGGCTGACTGGGCCTCCAGGGTCGCAGGGAGAGCTGGGGCGGATTGGACTGCCTGGTGGCAAAGGAGATGATGGCTGGCCGGGAGCTCCGGGCTTACCAG
Seq A exon
GTTTTCCGGGACTCCGTGGGATCCGCGGCTTACACGGCTTGCCAGGCACCAAGGGCTTTCCAGGATCCCCAG
Seq C2 exon
GTTCTGACATCCACGGAGACCCAGGCTTCCCAGGCCCTCCTGGGGAAAGAGGTGACCCAGGAGAGGCCAACACCCTTCCAGGCCCTGTGGGAGTCCCAGGACAGAAAGGAGACCAAGGAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134871-'48-49,'48-48,49-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(8.3=13.5),PF0139113=Collagen=PU(57.1=97.3)
A:
PF0139113=Collagen=FE(38.1=100)
C2:
PF0139113=Collagen=PD(3.2=4.7),PF0139113=Collagen=PU(42.9=90.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCAAAGGAGATGATGGCT
R:
CTGGAGCTCCTTGGTCTCCTT
Band lengths:
171-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)