GgaEX6005458 @ galGal4
Exon Skipping
Gene
ENSGALG00000016843 | COL4A2
Description
collagen, type IV, alpha 2 precursor [Source:RefSeq peptide;Acc:NP_001155862]
Coordinates
chr1:138375747-138377899:+
Coord C1 exon
chr1:138375747-138375854
Coord A exon
chr1:138377332-138377403
Coord C2 exon
chr1:138377774-138377899
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGAGTCTAATTTTAAAACAGGCT
3' ss Score
4.66
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTTTGCCTGGACTGGTCGGCCCTCCAGGGCAGCAAGGAAGCCCCGGGACGCCTGGATTCCAAGGAGAAAAAGGAGCTCCCGGCTGGCCTGGCTTACCAGGACAAGCAG
Seq A exon
GCTTGCCTGGCTTAAGAGGAATCAGTGGACTGCATGGTTTACCGGGCACCAAGGGCTTACCAGGATCACCAG
Seq C2 exon
GTCCAGACGGCTATGGCTCTGCGGGCTTCCCAGGCCCTGTGGGTGACAAAGGAGAAGCAGGAGAGCCCAGCAGAGTGGAGGGCAGCCAAGGCCCGCCGGGTCAGAAGGGAGACAGAGGTGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016843-'57-62,'57-61,58-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(10.0=16.2),PF0139113=Collagen=FE(46.8=100),PF0139113=Collagen=PU(15.3=24.3)
A:
PF0139113=Collagen=FE(31.2=100),PF0139113=Collagen=FE(40.7=100)
C2:
PF0139113=Collagen=PD(5.2=9.3),PF0139113=Collagen=PD(42.4=58.1),PF0139113=Collagen=PU(32.8=44.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCCTGGATTCCAAGGAGAA
R:
CCTCTGTCTCCCTTCTGACCC
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]