MmuEX6046156 @ mm9
Exon Skipping
Gene
ENSMUSG00000031273 | Col4a6
Description
collagen, type IV, alpha 6 [Source:MGI Symbol;Acc:MGI:2152695]
Coordinates
chrX:137613610-137616699:-
Coord C1 exon
chrX:137616592-137616699
Coord A exon
chrX:137614000-137614071
Coord C2 exon
chrX:137613610-137613735
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTGATGTTTTCTCTCCTTAGGAT
3' ss Score
12.31
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GACTTCAAGGGATTTCAGGTATGAATGGAGACCCAGGCCTCCCAGGTTCCTCTGGCCATCTGGGGTCAATTGGCCGCCCTGGACCCTCAGGCTTAATAGGACCTAAAG
Seq A exon
GATTCCCTGGAGCTCCTGGTTTACATGGACTGAATGGACTTCCAGGCACCAAGGGCACCCATGGCACTCCAG
Seq C2 exon
GAGCCAGTATCACTGGTGTTCCTGGGCCGGCTGGCCTGCCTGGTCCCAAAGGGGAAAGGGGAGTGCCAGGAATTGTCATCGGAGATCCAGGGAAACAAGGTTCAAAGGGACAAAAAGGTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031273-'40-41,'40-40,41-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.5=21.6),PF0139113=Collagen=PU(55.7=91.9)
A:
PF0139113=Collagen=FE(39.3=100)
C2:
PF0139113=Collagen=PD(3.3=4.7),PF0139113=Collagen=PU(65.0=90.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTTCCTCTGGCCATCT
R:
CCTTGTTTCCCTGGATCTCCG
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: