GgaEX1016810 @ galGal4
Exon Skipping
Gene
ENSGALG00000008266 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chr4:14052952-14054527:+
Coord C1 exon
chr4:14052952-14053059
Coord A exon
chr4:14053485-14053556
Coord C2 exon
chr4:14054402-14054527
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTTCCCAATATCTCTTCAGGGT
3' ss Score
8.61
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GAATCCCTGGAAATGCTGGGCTAAGAGGAATCTCTGGGCCACCAGGGCCTCCAGGGCAGCCAGGATCTGTTGGATTCCCAGGAGCTCGTGGAACAGCAGGACCAAAAG
Seq A exon
GGTTTCATGGATTTCCAGGTTTAAATGGTCTGAATGGCTTGCCAGGCACGAAAGGGTCTCCTGGAACGCCAG
Seq C2 exon
GTCTGAGTGAAGTTGGACTGAAAGGCCCTGCAGGTCTCCCTGGTCTGAAGGGTGAGGAAGGTTCTCCAGGTTTGGGTAGAGGAGCTGTAGGATTCCCGGGGCCAAAAGGCTCATCTGGAGACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008266-'64-49,'64-47,66-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(57.1=97.3)
A:
PF0139113=Collagen=FE(38.1=100)
C2:
PF0139113=Collagen=PD(3.2=4.7),PF0139113=Collagen=PU(65.0=90.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGAAATGCTGGGCTAAG
R:
ACCTGGAGAACCTTCCTCACC
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]