RnoEX6026609 @ rn6
Exon Skipping
Gene
ENSRNOG00000056772 | Col4a6
Description
collagen type IV alpha 6 chain [Source:RGD Symbol;Acc:1589724]
Coordinates
chrX:112417964-112420944:-
Coord C1 exon
chrX:112420837-112420944
Coord A exon
chrX:112418543-112418614
Coord C2 exon
chrX:112417964-112418089
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTGATGTTTTCTCTCCTTAGGAT
3' ss Score
12.31
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GACTTAAAGGGATTTCAGGTATGAATGGAGACCCAGGCTTCCCAGGTTCCTCTGGCCATGTGGGATCGATCGGCCGCCCTGGACCCTCTGGCTTAATAGGACCTAAAG
Seq A exon
GATTCCCTGGACTTCCTGGTTTACATGGACTGAATGGACTTCCAGGCACCAAGGGTACTCACGGCACTCCAG
Seq C2 exon
GAGCCAGTATCACTGGTGTTCCTGGGCCAGCTGGCCTGCCTGGTCCCAAAGGGGAAAAGGGAATGCCAGGAATTGTCATCGGAGATCCAGGGAAACAAGGCTTAAGGGGACAAAAAGGTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056772-'32-34,'32-32,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.6=32.4),PF0139113=Collagen=PU(57.1=97.3)
A:
PF0139113=Collagen=FE(38.1=100)
C2:
PF0139113=Collagen=PD(3.2=4.7),PF0139113=Collagen=PU(65.0=90.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCTTCCCAGGTTCCTCTG
R:
GCCTTGTTTCCCTGGATCTCC
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]