BtaEX6005973 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013760 | COL4A6
Description
collagen, type IV, alpha 6 [Source:HGNC Symbol;Acc:HGNC:2208]
Coordinates
chrX:61065460-61067400:-
Coord C1 exon
chrX:61067293-61067400
Coord A exon
chrX:61066451-61066522
Coord C2 exon
chrX:61065460-61065585
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTGATCTTCTCTCCCCTCAGGTT
3' ss Score
12.74
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GACTCCCCGGAGTTGCAGGCATGAGAGGAAATCCAGGGCTTCCAGGTTCTCCAGGCCACCCAGGGGCAACTGGGCCCCTGGGTCCCCCTGGCCTAATAGGAACCAAAG
Seq A exon
GTTTCCCTGGACTTCCAGGTTTACATGGACTGAATGGGCTTCCAGGAACCAAGGGGACTCATGGAACTCCAG
Seq C2 exon
GACCTAGTATAACCGGTGTGCCTGGGCCAGCTGGCTTGCCTGGTCCCAAAGGGGAAAAAGGTTCTCCAGGAATTGGCATCGGAGCCCCAGGAAAGCCAGGTATAAGAGGACCCAAAGGTAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013760-'36-37,'36-35,37-37=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(8.8=16.2),PF0139113=Collagen=PU(57.1=97.3)
A:
PF0139113=Collagen=FE(38.1=100)
C2:
PF0139113=Collagen=PD(3.2=4.7),PF0139113=Collagen=PU(65.0=90.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGCAGGCATGAGAGGAA
R:
TCCTGGAGAACCTTTTTCCCCT
Band lengths:
170-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]