GgaEX1016810 @ galGal3
Exon Skipping
Gene
ENSGALG00000008266 | COL4A6
Description
NA
Coordinates
chr4:14203354-14204929:+
Coord C1 exon
chr4:14203354-14203461
Coord A exon
chr4:14203887-14203958
Coord C2 exon
chr4:14204804-14204929
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTTCCCAATATCTCTTCAGGGT
3' ss Score
8.61
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GAATCCCTGGAAATGCTGGGCTAAGAGGAATCTCTGGGCCACCAGGGCCTCCAGGGCAGCCAGGATCTGTTGGATTCCCAGGAGCTCGTGGAACAGCAGGACCAAAAG
Seq A exon
GGTTTCATGGATTTCCAGGTTTAAATGGTCTGAATGGCTTGCCAGGCACGAAAGGGTCTCCTGGAACGCCAG
Seq C2 exon
GTCTGAGTGAAGTTGGACTGAAAGGCCCTGCAGGTCTCCCTGGTCTGAAGGGTGAGGAAGGTTCTCCAGGTTTGGGTAGAGGAGCTGTAGGATTCCCGGGGCCAAAAGGCTCATCTGGAGACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008266-'37-38,'37-37,38-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(9.8=21.6),PF0139113=Collagen=FE(43.4=100),PF0139113=Collagen=PU(57.1=97.3)
A:
PF0139113=Collagen=PD(8.4=28.0),PF0139113=Collagen=FE(38.1=100)
C2:
PF0139113=Collagen=PD(3.2=4.7),PF0139113=Collagen=PU(64.5=93.0),PF0139113=Collagen=PU(29.3=39.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGAAATGCTGGGCTAAG
R:
ACCTGGAGAACCTTCCTCACC
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]