DreEX6007347 @ danRer10
Exon Skipping
Gene
ENSDARG00000052061 | col4a6
Description
collagen, type IV, alpha 6 [Source:ZFIN;Acc:ZDB-GENE-101001-2]
Coordinates
chr7:50656442-50656984:-
Coord C1 exon
chr7:50656877-50656984
Coord A exon
chr7:50656656-50656727
Coord C2 exon
chr7:50656442-50656561
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATGTTTCACTTTATCTTTAGGTT
3' ss Score
10.74
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTTCATCAGGCCCCCCAGGCCCTAGGGGTCTCCCTGGTTATCCAGGACTGAGGGGGCGTGATGGAGATCCAGGCCGTCCTGGAGGTCCAGGCTTACCAGGAGATAAAG
Seq A exon
GTTTTCCGGGTTCACCTGGTTTAGATGGACTCAATGGGCTTCCAGGATCGAGAGGGCCACCTGGAGTTCCAG
Seq C2 exon
GTGTGATTGAAGGTGGTCGGGTTGGGCCGCCTGGTGTAAACGGACAAAAAGGAGAGAGAGGAACATCACAACCTGGAGTACCTGGCCGCCCCGGAGAAAAAGGGGTCAGAGGAGACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052061-'38-41,'38-40,39-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(9.7=16.2),PF0139113=Collagen=PU(57.1=97.3)
A:
PF0139113=Collagen=FE(38.1=100)
C2:
PF0139113=Collagen=PD(3.2=4.9),PF0139113=Collagen=PU(58.7=90.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTATCCAGGACTGAGGGGG
R:
TCTGACCCCTTTTTCTCCGGG
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]