RnoEX0023258 @ rn6
Exon Skipping
Gene
ENSRNOG00000023972 | Col4a2
Description
collagen type IV alpha 2 chain [Source:RGD Symbol;Acc:1308085]
Coordinates
chr16:83394381-83396069:-
Coord C1 exon
chr16:83395962-83396069
Coord A exon
chr16:83395231-83395302
Coord C2 exon
chr16:83394381-83394506
Length
72 bp
Sequences
Splice sites
3' ss Seq
ACTAAGCCAATTTCCTATAGGCA
3' ss Score
3.77
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCTTCCCGGGGCTCACAGGGCTGCAAGGGCCACAGGGAGAGCCCGGACGGATCGGAATACCTGGTGACAAGGGTGATTTCGGCTGGCCAGGGGTACCTGGTAGACCAG
Seq A exon
GCATCCCGGGAATCCGAGGGATCAGCGGATTACATGGCCTGCCAGGCACCAAAGGCTTCCCTGGATCCCCAG
Seq C2 exon
GTGTCGATGCCCATGGTGACCCAGGGTTCCCAGGCCCCACTGGAGACAGGGGTGACCGGGGAGAGGCCAACACACTTCCAGGCCCTGTAGGAGCTCCAGGGCAGAAAGGGGAGCAGGGAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023972-'43-42,'43-41,44-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(10.0=16.2),PF0139113=Collagen=FE(52.2=100)
A:
PF0139113=Collagen=FE(34.8=100)
C2:
PF0139113=Collagen=PD(5.8=9.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATCGGAATACCTGGTGA
R:
CTTTCTGCCCTGGAGCTCCTA
Band lengths:
170-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]