BtaEX6058201 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010791 | HTR3A
Description
Bos taurus 5-hydroxytryptamine (serotonin) receptor 3A (HTR3A), mRNA. [Source:RefSeq mRNA;Acc:NM_001193169]
Coordinates
chr15:24848406-24849408:+
Coord C1 exon
chr15:24848406-24848566
Coord A exon
chr15:24848874-24849084
Coord C2 exon
chr15:24849187-24849408
Length
211 bp
Sequences
Splice sites
3' ss Seq
GAGCTCCTCTCTCTATCCAGGTG
3' ss Score
10.46
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
TCCAGGACATCAACATCTCCCTGTGGCGCCTGCCTGAAAAGGTGAAGTTCGACAGGAGTGTCTTCATGAACCAGGGCGAGTGGGAGCTGCTGGGGGTGCTGACCCAGTTTCAGGAGTTCAGTATAGAAAGCAGTGACAGCTACGCAGAGATGAAGTTCTAT
Seq A exon
GTGGTCATCCGCCGACGGCCCCTCTTCTATGCGGTCAGCCTGCTTCTGCCCAGTATCTTCCTCATGGTCGTGGACATTGTGGGCTTCTATCTGCCTCCAGACAGTGGTGAGAGAGTTTCCTTCAAGATCACGCTCCTCCTGGGCTACTCGGTCTTCCTGATCATCGTGTCCGACACGCTGCCTGCCACGGCCATCGGCACGCCGCTCATCG
Seq C2 exon
GTGTCTACTTTGTCGTGTGCATGGCTCTCCTGGTGATCAGCTTGGCCGAGACGATCCTCATTGTGCGGCTGGTACACAAACAGGACCTGCAGCAGCCGGTGCCCGCCTGGCTGCGCCACCTGGTTCTTGAGAGAGTCACCCTGCTCCTCTGCCTAGGGGACCAGTCGACAGCCCGGAGGCCCGCGGCCACCTCCCAGGCTGCCAAGACCGATGACTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010791-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.107
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(25.4=100)
A:
PF0293118=Neur_chan_LBD=PD(2.9=8.5),PF0293211=Neur_chan_memb=PU(25.8=80.3)
C2:
PF0293211=Neur_chan_memb=FE(33.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAACATCTCCCTGTGGCG
R:
GGAGCAGGGTGACTCTCTCAA
Band lengths:
301-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]