RnoEX6035634 @ rn6
Exon Skipping
Gene
ENSRNOG00000006595 | Htr3a
Description
5-hydroxytryptamine receptor 3A [Source:RGD Symbol;Acc:61818]
Coordinates
chr8:53212719-53214089:-
Coord C1 exon
chr8:53213929-53214089
Coord A exon
chr8:53213392-53213602
Coord C2 exon
chr8:53212719-53212940
Length
211 bp
Sequences
Splice sites
3' ss Seq
AGCTTCTATCCTGGTCCCAGGTG
3' ss Score
6.49
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
TCCAGGACATCAACATTTCCCTGTGGCGAACACCAGAAGAAGTGAGGTCGGACAAGAGCATCTTCATAAATCAGGGCGAGTGGGAGCTGCTGGGGGTGTTCACCAAATTTCAGGAGTTCAGTATAGAAACCAGTAACAGCTATGCGGAAATGAAGTTCTAC
Seq A exon
GTGGTCATCCGCCGGCGGCCTTTATTCTACGCAGTCAGCCTCTTGCTGCCCAGTATCTTCCTCATGGTTGTGGACATTGTGGGCTTTTGTCTGCCCCCGGACAGTGGTGAGAGAGTGTCTTTCAAGATCACGCTCCTTCTGGGATACTCAGTCTTTCTCATCATCGTGTCAGACACACTGCCTGCAACGGCCATCGGCACTCCCCTCATTG
Seq C2 exon
GTGTCTACTTTGTAGTGTGCATGGCTCTGCTGGTGATAAGCCTCGCTGAGACCATCTTCATTGTGCAGCTGGTGCATAAGCAGGATTTACAGCGCCCTGTACCTGACTGGCTGAGGCACCTGGTCCTAGACAGAATAGCCTGGCTGCTCTGCCTAGGGGAGCAGCCCATGGCCCATAGGCCCCCAGCCACCTTCCAAGCCAACAAGACTGATGACTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006595-'11-17,'11-14,12-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.067
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(25.4=100)
A:
PF0293118=Neur_chan_LBD=PD(2.9=8.5),PF0293211=Neur_chan_memb=PU(25.8=80.3)
C2:
PF0293211=Neur_chan_memb=FE(33.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATTTCCCTGTGGCGAACA
R:
CAGAGCAGCCAGGCTATTCTG
Band lengths:
301-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]