GgaEX6025767 @ galGal4
Exon Skipping
Gene
ENSGALG00000007004 | HTR3A
Description
5-hydroxytryptamine (serotonin) receptor 3A, ionotropic [Source:HGNC Symbol;Acc:HGNC:5297]
Coordinates
chr24:4454854-4456195:+
Coord C1 exon
chr24:4454854-4455014
Coord A exon
chr24:4455307-4455517
Coord C2 exon
chr24:4455962-4456195
Length
211 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCTATGTTCCAATAGGTC
3' ss Score
10.94
5' ss Seq
TAGGTACGG
5' ss Score
7.82
Exon sequences
Seq C1 exon
TCCACGACATCAACCTCTCGCTGTGGCGGCAGCCGGAGCTGGTGAAATTCGACAGGAGCGTCTTCATGAACCAGGGCGAGTGGGAGCTGCTGTACGTGCTCAGCCACTTCCAGGAGTTCAGCGTCAAAAGCAGCGACAGCTACGCCGAGATGAAGTTCTAC
Seq A exon
GTCGTCATCCGGAGGCGTCCTCTCTTCTATACCATCAACCTGCTGCTCCCTAGTATCTTCTTGATGGTGATGGACATTGTAGGCTTCTACCTGCCTCCCAACAGTGGCGAGAGGGTCTCTTTCAAGATCACTCTCCTCCTGGGCTACTCAGTTTTCCTCATCATCGTATCTGACACGCTTCCAGCTACTGCTGTTGGCACCCCACTGATAG
Seq C2 exon
GCATCTATTTTGTGGTGTGCATGGCGTTGCTCGTCATCAGCCTCACAGAGACCATCTTCATTGTGCGCCTGGTACACAAGCAAGACCTGCAGCCTCACGTCCCCAGCTGGGTGAAGCACTTACTGCTGGAACGTGCCACTGCACTGCTCTGCATCTGGGACAGGAAGAAATTCAGCCAAAGCAGAACACAGAGCTCAGACATCTCCAGGCACGTGGAGAACAATGACAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007004-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(25.4=100)
A:
PF0293118=Neur_chan_LBD=PD(2.9=8.5),PF0293211=Neur_chan_memb=PU(25.4=80.3)
C2:
PF0293211=Neur_chan_memb=FE(34.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACGTGCTCAGCCACTTC
R:
GTCATTGTTCTCCACGTGCCT
Band lengths:
299-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]