MmuEX6065682 @ mm10
Exon Skipping
Gene
ENSMUSG00000032269 | Htr3a
Description
5-hydroxytryptamine (serotonin) receptor 3A [Source:MGI Symbol;Acc:MGI:96282]
Coordinates
chr9:48900561-48901578:-
Coord C1 exon
chr9:48901418-48901578
Coord A exon
chr9:48900874-48901084
Coord C2 exon
chr9:48900561-48900782
Length
211 bp
Sequences
Splice sites
3' ss Seq
AGCTTCTATCCTGGTCCCAGGTG
3' ss Score
6.49
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
TCCAGGACATCAACATTACCCTGTGGCGATCACCGGAAGAAGTGAGGTCTGACAAGAGCATCTTCATAAATCAGGGCGAGTGGGAGCTGCTGGAGGTGTTCCCCCAGTTCAAGGAGTTCAGCATAGATATCAGTAACAGCTATGCAGAAATGAAGTTCTAC
Seq A exon
GTGATCATCCGCCGGAGGCCTTTATTCTACGCAGTCAGCCTCTTGCTGCCCAGTATCTTCCTCATGGTCGTGGACATTGTGGGCTTTTGCCTGCCCCCGGACAGCGGTGAGAGAGTCTCTTTCAAGATCACACTCCTTCTGGGATACTCAGTCTTCCTCATCATCGTGTCAGACACACTGCCAGCAACGGCCATCGGTACCCCCCTCATTG
Seq C2 exon
GTGTCTATTTTGTGGTGTGCATGGCTCTGCTAGTGATAAGCCTCGCTGAGACCATCTTCATTGTGCGGCTGGTGCATAAGCAGGACCTACAGCGGCCAGTACCTGACTGGCTGAGGCACCTGGTCCTAGACAGAATAGCCTGGATACTCTGCCTAGGGGAGCAGCCTATGGCCCATAGACCCCCAGCCACCTTCCAAGCCAACAAGACTGATGACTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032269-'10-9,'10-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.060
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(25.4=100)
A:
PF0293118=Neur_chan_LBD=PD(2.9=8.5),PF0293211=Neur_chan_memb=PU(25.1=80.3)
C2:
PF0293211=Neur_chan_memb=FE(32.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATCACCGGAAGAAGTGAG
R:
GCTCCCCTAGGCAGAGTATCC
Band lengths:
298-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types