DreEX6084631 @ danRer10
Exon Skipping
Gene
ENSDARG00000089212 | htr3a
Description
5-hydroxytryptamine (serotonin) receptor 3A [Source:ZFIN;Acc:ZDB-GENE-071012-5]
Coordinates
chr21:23104012-23109946:+
Coord C1 exon
chr21:23104012-23104172
Coord A exon
chr21:23106143-23106353
Coord C2 exon
chr21:23109747-23109946
Length
211 bp
Sequences
Splice sites
3' ss Seq
CCATCTGCTTTTCTCTGCAGGTT
3' ss Score
12.51
5' ss Seq
TCGGTAATG
5' ss Score
6.42
Exon sequences
Seq C1 exon
CTAAAGACATCAACATCACACTAATGAGAAGCCCTGAGGCTGTCAAGACAGACAAGAGTGTGTTCATGAACCAGGGAGAATGGGAGCTGCTTCACGTCCTCTCCACATACAACGCGTTCAGCATTGATAATGATGATTACTACGCCGAAATGAAGTTCCAT
Seq A exon
GTTGTGATCCGGCGCAGACCTCTTTTCTACACAGTCAACCTCCTGCTGCCCAGTATGTTTCTGATGGTGATGGATATTGTTGGCTTCTACCTGCCGCCTGACAGCGGAGAGCGAGTGTCCTTCAAGATCACCCTGCTTCTGGGCTACTCCGTGTTCCTCATCATTGTCTCTGACACTCTGCCAGCCACTGCCATCGGGACTCCTCTCATCG
Seq C2 exon
GTGTGTACTTTGTGGTCTGCATGGCGCTGCTGGTCATCAGTCTGACCGAGTCAGTGTTGATCGTGAGGCTGGTGCACAAGCAGGATCTGCAGTCCCGTGTGCCACAGTGGGTCAAACACCTGGTGCTGGAGAAGGCCACAGTCCTGCTCTGCATTCGCAACAAGAAGATCTGCTCGTTCCGCTCACAGGGGTCCGACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089212-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(25.4=100)
A:
PF0293118=Neur_chan_LBD=PD(2.9=8.5),PF0293211=Neur_chan_memb=PU(48.3=80.3)
C2:
PF0293211=Neur_chan_memb=PD(50.8=89.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACTAATGAGAAGCCCTGAGG
R:
GAATGCAGAGCAGGACTGTGG
Band lengths:
301-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]