BtaEX6058206 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010791 | HTR3A
Description
Bos taurus 5-hydroxytryptamine (serotonin) receptor 3A (HTR3A), mRNA. [Source:RefSeq mRNA;Acc:NM_001193169]
Coordinates
chr15:24838867-24842791:+
Coord C1 exon
chr15:24838867-24838936
Coord A exon
chr15:24841196-24841362
Coord C2 exon
chr15:24842747-24842791
Length
167 bp
Sequences
Splice sites
3' ss Seq
GCGCTGTCTGTCCTTCCCAGCCA
3' ss Score
7.72
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
ATGCTGCCCTGGCTGCCACGGGCGCTGCTCGGCTTGCTTCTGCCCACGCTGCTGGCACCATGGGGAGAGG
Seq A exon
CCAAGCACAGGGGGGACCCCCAGCCCCCCAACGCCTCCAGGCCGGCTCTGCTGCGGCTGTCAGATCACCTGCTGGCCAACTACAAGAAGGGCGTGCGGCCCGTGCGGGACTGGAGGACACCGACCACTGTGTCCATCGACGTCATTGTCTACGCCATCCTCAGCGTG
Seq C2 exon
GATGAGAAGAATCAGGTCCTGACCACCTACATCTGGTATCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010791-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.179 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.7=69.6)
C2:
PF0293118=Neur_chan_LBD=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCGGCTTGCTTCTG
R:
GCCGATACCAGATGTAGGTGG
Band lengths:
90-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]