MmuEX0023427 @ mm10
Exon Skipping
Gene
ENSMUSG00000032269 | Htr3a
Description
5-hydroxytryptamine (serotonin) receptor 3A [Source:MGI Symbol;Acc:MGI:96282]
Coordinates
chr9:48907354-48911021:-
Coord C1 exon
chr9:48910899-48911021
Coord A exon
chr9:48908595-48908761
Coord C2 exon
chr9:48907354-48907398
Length
167 bp
Sequences
Splice sites
3' ss Seq
TAAACCACTCTCCTTCCCAGGCA
3' ss Score
6.93
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGGGGACTCATCCTGAGTGGCTGCTCTGAGGCCCTCCCACATCTGGGAAGCTTGCCATGCGGCTCTGCATCCCGCAGGTGCTGTTGGCCTTGTTCCTTTCCATGCTGACAGCCCCGGGAGAAG
Seq A exon
GCAGCCGGAGGAGGGCCACCCAGGCCCGAGATACCACCCAGCCTGCTCTACTAAGGCTGTCAGACCACCTCCTGGCTAACTACAAGAAGGGGGTGCGGCCTGTGCGGGACTGGAGGAAGCCTACTACTGTCTCCATTGATGTCATCATGTATGCCATCCTCAACGTG
Seq C2 exon
GATGAGAAGAACCAGGTTCTGACCACCTACATATGGTACCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032269-'0-3,'0-1,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.7=69.6)
C2:
PF0293118=Neur_chan_LBD=FE(6.7=100)
Main Skipping Isoform:
ENSMUST00000217289fB11306
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCCTGAGTGGCTGCTCT
R:
CTGCCGGTACCATATGTAGGTG
Band lengths:
162-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types